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1.9B5.2 might fix it 
re-building group/password files makes bad group files for NCSA httpd
(Blaine Price)
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If you really mean 1.9B1, it's time for an upgrade to B5.2. But it sounds like you mean 1.9B5, and it is still time for an upgrade. I have worked on the code that rebuilds groups, included in B5.2, and perhaps I fixed the bug you hit. We have about 2000 All members at union, and I have rebuilt recently - it seemed to work fine, dividing the list up into 7 groups. One of the changes I made should also eliminate the ".file" members. |
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